- Consortium Research Platform on Genomics (CRP-Genomics)
(Beta Version)
| Sr. | Authors/Year/Title/Journal | DOI/Website |
|---|---|---|
| 2024 | ||
| | Chowdhury, L.M., Mohindra, V., Kumar, R., J.K. Jena (2024). Genome sequencing and assembly of Indian major carp, Cirrhinus mrigala (Hamilton, 1822). Sci Data 11, 898 (2024) | https://doi.org/10.1038/s41597-024-03747-6 |
| | Ahlawat S, Vasu M, Choudhary V, Arora R, Sharma R, Mir MA , Singh MK (2024).Comprehensive evaluation and validation of optimal reference genes for normalization of qPCR data in different caprine tissues.Molecular Biology Reports, 51(1), 268. | https://doi.org/10.1007/s11033-024-09268-0 |
| | Ahlawat S, Vasu M, Mir MA, Singh MK, Arora R, Sharma R, Chhabra P , Sharma U (2024). Molecular insights into Pashmina production: comparative skin transcriptomic analysis of Changthangi goats and sheep. Mammalian genome,, 35(2):160-169. | 10.1007/s00335-024-10040-9 |
| | Augustine N, Selvapandian U, Venkatesan T, Srinivasa N, Saraswathy BP, Mohan M (2024). Evaluation of reference genes for expression studies in the broad mite, Polyphagotarsonemus latus (Acari: Tarsonemidae). Applied Entomology Zoology,, 59, 31-40. | https://doi.org/10.1007/s13355-023-00848-3 |
| | Balamurugan A, Ashajyothi M, Shanu K, Charishma K, Varun H, and Gunjeet K, Kumar A (2024) .Chrysanthemum wilt caused by Fusarium incarnatum: Etiology unveiled through polyphasic taxonomic methods.Physiological and Molecular Plant Pathology, 129, 102214. | 10.1016/j.pmpp.2023.102214 |
| | Balamurugan A, Ashajyothi M, Velmurugan S, Charishma K, Sakthivel K, Muthamilan M, Kumar A (2024).Bacillus Amyloliquefaciens: a versatile antimicrobial Firmicute for the suppression of wilt caused by Ralstonia Pseudosolanacearum in tomato. Bio control Science and Technology, 34(4), 336–354 | https://doi.org/10.1080/09583157.2024.2342475 |
| | Balamurugan M, Mallikarjuna MG, Bansal S, Nayaka CS, Rajashekara H,TS Chellapilla , Prakash G (2024). Genome-wide identification and characterization of NBLRR genes in Finger millet (Eleusine Coracana (L.) and their expression in response to Magnaporthe Grisea infection. BMC Plant Biology, 24, 75 | 10.1186/s12870-024-04743-z |
| | Basak P, Gurjar MS, Kashyap N, Kumar TPJ, Khokhar MK, Jha S, Saharan MS (2024).Morphological, pathogenic and molecular analysis of Bipolaris sorokiniana inciting spot blotch of barley in India. Indian Phytopathology, 76: 759-768. | 10.1007/s42360-024-00712-6 |
| | Basak P, Gurjar MS, Kumar TPJ, Kashyap N, Singh D, Jha SK , Saharan MS (2024).Transcriptome analysis of Bipolaris Sorokiniana-Hordeum vulgare provides insights into mechanisms of host-pathogen interaction. Frontier Microbiology,, 15:1360571 | 10.3389/fmicb.2024.1360571 |
| | Nallathambi P, Umamaheswari C, Reddy B, Aarthy B, Javed M, Ravikumar P, Watpade S, Kashyap PL, Boopalakrishnan G, Kumar S, Sharma A, Kumar A (2024). Deciphering the Genomic Landscape and Virulence Mechanisms of the Wheat Powdery Mildew Pathogen Blumeria Graminis f. sp. tritici Wtn1: Insights from Integrated Genome Assembly and Conidial Transcriptomics. Journal of Fungi,, 10(4), 267 | 10.3390/jof10040267 |
| | Sahu S, Rao AR, Sahu TK, Pandey J ,Varshney S, Kumar , Gaikwad K (2024).Predictive Role of Cluster Bean (Cyamopsis tetragonoloba) Derived miRNAs in Human and Cattle Health. Genes,,15(4), 448 | https://doi.org/10.3390/genes15040448 |
| | Yadav S, Kumari R, Rangan P, Gaikwad AB (2024).Variability in genome size of Trigonella Foenum-Graecum, Trigonella Corniculata and Trigonella Caerulea as estimated by flow cytometry indicates complex evolutionary history of fenugreek. Molecular Biology Reports,,51(1):489 | 10.1007/s11033-024-09417-5 |
| | Vasu M, Ahlawat S, Choudhary V, Kaur R, Arora R, Sharma R, Sharma U, Chhabra P, Mir MA, Singh MK (2024).Identification and validation of stable reference genes for expression profiling of target genes in diverse ovine tissues. Gene, 877, 147532. | https://doi.org/10.1016/j.gene.2023.148067 |
| 2023 | ||
| | Balamurugan A, Kumar A (2023) Postharvest fruit rot of Bell pepper (Capsicum annuum L.): Pathogenicity and Host range of Alternaria alternata.Scientia Horticulturae, 319,112156. | 10.1016/j.scienta.2023.112156 |
| | Gaikwad K, Ramakrishna G, Srivastava H, Saxena S, Kaila T, Tyagi A, Sharma P, Sharma S, Sharma R, Mahla HR , Kumar K (2023). The chromosome-scale genome assembly of cluster bean provides molecular insight into edible gum (galactomannan) biosynthesis family genes.Scientific Reports, 13(1), 9941 | https://doi.org/10.1038/s41598-023-33762-3 |
| | Vasu M, Ahlawat S, Chhabra P, Sharma U, Arora R, Sharma R, Mir MA, Singh MK (2023).Genetic insights into fiber quality, coat color and adaptation in Changthangi and Muzzafarnagri sheep: A comparative skin transcriptome analysis. Gene, 891,147826. | 10.1016/j.gene.2023.147826 |
| | Rana D, Sharma P, Arpita K, Srivastava H, Sharma S, Gaikwad K (2023).Genome-wide identification and characterization of GRAS gene family in pigeonpea (Cajanus cajan (L.) Millspaugh).3 Biotech, 13(11):363. | 10.1007/s13205-023-03782-x |
| | Pahal S, Arpita K, Srivastava H, Sharma S, Grewal S, Gaikwad K (2023).Understanding the structure and function of GDSL-type esterase/lipase genes in pigeon pea for their role under moisture stress conditions. Plant Stress, , 10, 100246. | https://doi.org/10.1016/j.stress.2023.100246 |
| | Kumar VR, Sharma U, Kapoor P, Raheja Ml, Arora R, Ahlawat S, Dureja V (2023).Design and validation of high-density SNP array of goats and population stratification of Indian goat breeds. MGene, , 885, 147691. | https://doi.org/10.1016/j.gene.2023.147691 |
| | Krishnan K, Prabhudas SK, Jayaraman K, Angel JR J, Jangam AK, Katneni VK, Shekhar MS (2023).Transcriptomic variations associated with salinity stress in Penaeus indicus. Molecular Biology Reports, 50(11):9295-9306. | https://doi.org/10.1007/s11033-023-08824-4 |
| | Chhabra P, Goel BM, Arora R (2023). Analysis of differentially expressed diverse non-coding RNAs in different stages of lactation of Murrah buffalo. BIOINFOLET, 20 (3B): 524-530. | https://www.indianjournals.com/ijor.aspx?target=ijor%3Abil&volume=20&issue=3b |
| | Ahlawat S, Choudhary V, Kaur R, Arora R, Sharma R, Chhabra P, Kumar A and Kaur M (2023).Unraveling the genetic mechanisms governing the host response to bovine anaplasmosis. Gene, 877, 147532. | 10.1016/j.gene.2023.147532 |
| | Ahlawat S, Choudhary V, Kaur R, Arora R, Sharma R, Chhabra P, Kumar A and Kaur M (2023).Unraveling the genetic mechanisms governing the host response to bovine anaplasmosis. Gene, 897, 148067. | 10.1016/j.gene.2023.147532 | | Ahlawat S, Choudhary V, Arora R, Kumar A, Kaur M, Chhabra P (2023).Exploring the transcriptome dynamics of in-vivo Theileria annulata infection in crossbred cattle.Genes | https://doi.org/10.3390/genes14091663 |
| | Ashajyothi M, Balamurugan A, Patel A, Krishnappa C, Kumar R, Kumar A (2023).Cell wall polysaccharides of endophytic Pseudomonas putida elicit defense against rice blast disease. Journal of Applied Microbiology, 134, 2, lxac042. | https://doi.org/10.1093/jambio/lxac042 | | Bansal S, Mallikarjuna MG, Reddy B, Balamurugan A, Achary VMM, Reddy MK, Kumar A, Prakash G (2023).Characterization and validation of hypothetical virulence factors in recently sequenced genomes of Magnaporthe species. Physiological and Molecular Plant Pathology, 124, 101969, ISSN 0885-5765 | https://doi.org/10.1016/j.pmpp.2023.101969 | | Chhabra P, Goel BM, Ahlawat S, Mishra AK , Arora R (2023). Data mining uncovers non-coding RNAs from RNA sequences of skeletal muscles of Indian sheep. Indian Journal of Small Ruminants, 29 (1): 32-35. | http://dx.doi.org/10.5958/0973-9718.2022.00089.7 | | Gaikwad AB, Kumari R, Yadav S, Rangan P, Wankhede DP , Bhat KV (2023).Small cardamom genome: development and utilization of microsatellite markers from a draft genome sequence of Elettaria cardamomum Maton. Frontier Plant Science, 14:1161499 | https://doi.org/10.3389/fpls.2023.1161499 | | Gaikwad AB, Kaila T, Maurya A, Kumari R, Rangan P, Wankhede DP, Bhat KV (2023).The chloroplast genome of black pepper (Piper nigrum L) and its comparative analysis with related Piper species .Frontiers in Plant Science, 13: 1095781 | https://doi.org/10.3389/fpls.2022.1095781 | | Javed M, Reddy B, Sheoran N, Ganesan P, Kumar A (2023). Unravelling the transcriptional network regulated by miRNAs in blast-resistant and blast-susceptible rice genotypes during Magnaporthe oryzae interaction. Gene886:147718 | • 10.1016/j.gene.2023.147718 | | Karthic K, Katneni VK, Prabhudas SK, Kaikkolante N, Jangam AK, Katneni UK, Hauton C, Peruzza L, Shekhar MS, Vijayan KK, Jithendran KP, Jena JK (2023). MRF: a tool to overcome the barrier of inconsistent genome annotations and perform comparative genomics studies for the largest animal DNA virus. Virology Journal,, 18; 20(1):72 | https://doi.org/10.1186/s12985-023-02035-w | | Kaur R, Ahlawat S, Choudhary V, Kumari A, Kumar A, Kaur M, Arora R, Sharma R, Vijh RK(2023).Validation of stable reference genes in peripheral blood mononuclear cells for expression studies involving vector-borne haemoparasitic diseases in bovines.Ticks and Tick-borne Diseases, 14 (4), 102168. | https://doi.org/10.1016/j.ttbdis.2023.102168 | | Mohan MH, Gurjar MS, Jain P, Kumar N, Saharan MS, Aggarwal R (2023).Differential gene expression analysis in germinating and dormant teliospores of Tilletia indica using RNA seq approach. IndianJournal of Experimental Biology (IJEB), 61, (03): 214-223. | http://op.niscair.res.in/index.php/IJEB/article/view/58626 | | Mohindra V, Chowdhury LM, Chauhan N, Paul A, Singh RK, Kushwaha B, Maurya RK, Lal KK, Jena JK (2022) Transcriptome analysis revealed osmoregulation related regulatory networks and hub genes in the gills of Hilsa shad, Tenualosa ilisha, during the migratory osmotic stress. Marine Biotechnology | http://doi.org/10.1007/s10126-022-10190-4 | | Srivastava A, Srivastava R, Yadav J, Kumar SinghA(2023). Virulence and pathogenicity determinants in whole genome sequence of Fusarium udum causing wilt of pigeon pea. Frontiers in Microbiology, 14:1066096. | 0.3389/fmicb.2023.1066096 | | Tyagi A, Sharma S, Srivastava H, Singh A, Kaila T, Singh NK, Gaikwad K (2023).Transcriptome profiling of two contrasting pigeon pea (Cajanus cajan) genotypes in response to waterlogging stress. Frontier in Genetics,10; 13:1048476 | https://doi.org/10.3389/fgene.2022.1048476 | | Velmurugan S, Ashajyothi M, Charishma K, Kumar S, Balamurugan A, Javed M, Karwa S, Ganesan P, Subramanian S, Gogoi R, Eke P, Kumar A (2023).Enhancing defense against rice blast disease: Unveiling the role of leaf endophytic firmicutes in antifungal antibiosis and induced systemic resistance. Microbial Pathogenesis, 28:106326. | • 10.1016/j.micpath.2023.106326 | | Yadav S, Tyagi A, Kumari R, Srivastava H, Gaikwad AB, Rangan P, Wankhede DP (2023).Comparative transcriptome profiling of fruit tissue provides novel insights into piperine biosynthesis in black pepper (Piper nigrum L.).Scientia Horticulturae , 322:112451. | https://doi.org/10.1016/j.scienta.2023.112451 |
| 2022 | ||
| | Aggarwal R, Agarwal S, Sharma S, Gurjar MS (2022). Whole-genome sequence analysis of Bipolaris sorokiniana infecting wheat in India and characterization of ToxA gene in different isolates as pathogenicity determinants. 3 Biotech ,12,151 | https://link.springer.com/article/10.1007/s13205-022-03213-3 |
| | Aggarwal, S.K. Singh, A. Choudhary, M.; Kumar, A.; Rakshit, S.; Kumar, P.; Bohra, A.; Varshney, R.K. (2022). Pathotyping in microbial and crop research: Progress, Applications and Perspectives. Genes, 13(4):Article No. 598. | https://www.mdpi.com/2073-4425/13/4/598 |
| | Ahlawat S, Choudhary V, Singh T, Arora R, Kumar A, Kaur M, Chhabra P, Sharma R, Kumar VR (2022). First report on delineation of differentially expressed genes and pathways in milk somatic cells of mastitis and healthy Murrah buffaloes. Gene; 831:146575. | https://doi.org/10.1016/j.gene.2022.146575 |
| | Ayham SM, Gurjar MS, Aggarwal R, Saharan MS, Gogoi R, Kumar N, Agarwal S, Kumar TPJ, Bayaa B, Khatib F (2022). Genome-wide association mapping of virulence genes in Wheat Karnal Bunt fungus Tilletia indica using double digest Restriction-Site Associated DNA-genotyping by sequencing approach. Frontiers in Microbiology, 13:852727. | https://doi.org/10.3389/fmicb.2022.852727 |
| | Chhabra P, Goel B M, Raja K. N, Mishra AK, Ahlawat S, Kaur M, Kumar A and Arora R. (2022) Mining of diverse short non-coding RNAs from transcriptome of milk somatic cells of Murrah buffalo. Journal of Veterinary and Animal Sciences. 53 (4) : 663-668 | https://doi.org/10.51966/jvas.2022.53.4.663-668 |
| | Kaur R, Ahlawat S, Choudhary V, Kumari A, Chhabra P, Arora R, Sharma R, Vijh RK. 2022. Comparative expression profiling of cytokine genes in Theileria annulata infected and healthy cattle. Tropical Animal Health and Production. 54:383. | /10.1007/s11250-022-03381-7 |
| | Gurjar, M.S.; Jain, S.; Aggarwal, R.; Saharan, M.S.; Kumar, T.P.J.; Kharbikar, L. Transcriptome Analysis of Wheat–Tilletia indica Interaction Provides Defense and Pathogenesis-Related Genes. Plants 2022, 11, 3061 | /10.3390/plants11223061 |
| | Kaur R, Ahlawat S, Choudhary V, Kumari A, Kumar A, Kaur M, Arora R, Sharma R, Vijh RK. (2022) Expression profiling of cytokine genes in peripheral blood mononuclear cells from Anaplasma marginale infected and healthy cattle. Animal Biotechnology. | 10.1080/10495398.2022.2146589 |
| | Katneni VK, Shekhar MS, Jangam AK, Krishnan K, Prabhudas SK, Kaikkolante N, Baghel DS, Koyadan VK, Jena JK and Mohapatra T (2022). A superior contiguous whole genome assembly for Shrimp (Penaeus indicus). Frontiers in Marine Science, 8:808354. | https://doi.org/10.3389/fmars.2021.808354 |
| | Kumar A, Kaur M, Ahlawat S, Singh MK, Vijh RK, Yadav A and Arora R (2022). Comparative expression of genes implicated in lipid metabolism across different tissues in Barbari goat of India. Indian Journal of Small Ruminants, 28(1):10-15. | 10.5958/0973-9718.2022.00031.9 |
| | Jangam AK, Katneni VK, Shekhar MS, Prabhudas SK, Krishnan K, Raymond JAJ, Sukumaran K, Kailasam M ,Jena JK (2022). Isoform Sequencing Based Transcriptome Resource for Flathead Grey Mullet (Mugil cephalus). Frontiers in Marine Science, 9:930017.28(1):10-15. | https://doi.org/10.3389/fmars.2022.930017 |
| | Mohindra V, Chowdhury LM, Chauhan N, Maurya RK, Jena JK (2022). Transcriptome analysis revealed hub genes for muscle growth in Indian major carp, Catla catla (Hamilton, 1822). Genomics, 114(4):110393. | 10.1016/j.ygeno.2022.110393 |
| | Reddy B, Mehta S, Prakash G, Sheoran N, Kumar A (2022). Structured framework and genome analysis of Magnaporthe grisea inciting pearl millet blast disease reveal versatile metabolic pathways, protein families, and virulence factors. Journal of Fungi, 8(6): 614. | https://doi.org/10.3390/jof8060614 |
| | Shekhar MS, Katneni VK, Jangam AK, Krishnan K, Prabhudas SK, Angel JR, Sukumaran K, Kailasam M , Jena JK (2022). First Report of Chromosome-Level Genome Assembly for Flathead Grey Mullet, Mugil cephalus (Linnaeus, 1758). Frontiers in Genetics, 13:911446. | https://doi.org/10.3389/fgene.2022.911446 . |
| | Srivastava AK, Srivastava R, Sharma A, Bharati, AP, Yadav, J, Singh AK, Saxena AK (2022).Transcriptome Analysis to Understand Salt Stress Regulation Mechanism of Chromohalo bactersalexigens ANJ207.Frontiers in Microbiology,13, 13:909276. | https://doi.org/10.3389/fmicb.2022.909276 . |
| 2021 | ||
| | Ahlawat S, Arora R, Sharma U, Sharma A, Girdhar Y, Sharma R, Kumar A, Vijh R K (2021). Comparative gene expression profiling of milk somatic cells of Sahiwal cattle and Murrah buffaloes. Gene, 764: 145101. | https://doi.org/10.1016/j.gene.2020.145101 |
| | Arora R, Siddaraju NK, Manjunatha SS, Sudarshan S, Mohamed NF, Kumar A, Chhabra P, Kaur M, Sreesujatha RM, Ahlawat S, Vijh RK (2021). Muscle transcriptome provides the first insight into the dynamics of gene expression with progression of age in sheep. Scientific Reports, 11(1):22360 |
10.1038/s41598-021-01848-5. |
| | Balasubramanian CP, Katneni VK, Shekhar MS, Kumar JA, Vijayan K (2021).Restoration of old genus name Penaeus based on molecular phylogenetic affiliations using complete mitochondrial genome. Current Science, 121: 423-428. |
|
| | Chowdhury LM, Maurya RK, Singh RK, Mishra S, Chauhan N, Jena JK, Mohindra V (2021). Discovery of alternatively spliced isoforms and long non-coding RNA in full length brain transcriptome of anadromous Hilsa shad, Tenualosa ilisha (Hamilton, 1822). Molecular Biology Reports, 48: 7333–7342. |
https://doi.org/10.1007/s11033-021-06735-w |
| | Gurjar MS, Aggarwal R, Jain S, Sharma S, Singh J, Gupta S, Aggarwal S, Saharan MS (2021). Multilocus sequence typing and single nucleotide polymorphism analysis in Tilletia indica isolates inciting Karnal Bunt of Wheat. Journal of Fungi, 7(2): 103. | https://doi.org/10.3390/jof7020103 |
| | Gurjar MS, Mohan MH, Singh J, Saharan MS, Aggarwal R (2021). Tilletia indica: biology, variability, detection, genomics and future perspective. Indian Phytopathology, 74: 21–31. | https://doi.org/10.1007/s42360-021-00319-1 |
| | Katneni VK, Shekhar MS, Jangam AK, Paran BC, Selvaraj A, Krishnan K, Kaikkolante N, Prabhudas SK, Gopalapillai G , Koyadan VK (2021). Phylogenetic relations and mitogenome-wide similarity metrics reveal monophyly of Penaeus sensulato. Ecology and Evolution, 11: 2040–2049. | https://doi.org/10.1002/ece3.7148 |
| | Kumar A, Kaur M, Ahlawat S, Sharma U, Singh M K, Singh KV, Chhabra P, Vijh R K, Yadav A, Arora R (2021). Transcriptomic diversity in Longissimus thoracis muscles of Barbari and Changthangi goat breeds of India. Genomics, 113: 1639-1646. | https://doi.org/10.1016/j.ygeno.2021.04.019 |
| | Mohan M, Kariyanna B, Prabhuraj A, Bheemanna Kalmath B, Pampanna Y, Diwan JR (2021). Influence of different cultivars and various environmental factors in population dynamics of Leucinodes orbonalis Guenee (Lepidoptera: Crambidae) in eggplant. Indian journal of Entomolgy, 83(1): 99-102. | https://doi.org/10.5958/0974-8172.2021.00043.2 |
| | Ramakrishna G, Kaur P, Singh A, Yadav SS, Sharma, SK (2021). Gaikwad, Genome wide identification and characterization of small heat shock protein gene family in pigeonpea and their expression profiling during abiotic stress conditions. International Journal of Biological Macromolecules, 197:88-102. | https://doi.org/10.1016/j.ijbiomac.2021.12.016 |
| | Reddy B, Kumar A, Mehta S, Sheoran N, Chinnusamy V, Prakash G (2021). Hybrid de novo genome-reassembly reveals new insights on pathways and pathogenicity determinants in rice blast pathogen Magnaporthe oryzae RMg_Dl. Scientific Reports (Springer), 11:22922., 197:88-102. | https://doi.org/10.1038/s41598-021-01980-2 |
| | Raymond J J A, Shekhar M S, Katneni V K, Jangham A K, Prabhudas S K, Kaikkolante N, Krishnan K, Sukumaran K, Kailasam M, Vijayan KK (2021). Comparative genome size estimation of different life stages of grey mullet, Mugil cephalus Linnaeus, 1758 by flow cytometry, Aquaculture Research , 1–8. | https://doi.org/10.1111/are.15639 |
| | Ramakrishna G, Kaur P, Singh A , Yadav SS , Sharma S, Singh NK, Gaikwad K (2021). Comparative transcriptome analyses revealed different heat stress responses in pigeonpea (Cajanus cajan) and its crop wild relatives. Plant Cell Report, 40: 881–898. | 10.1007/s00299-021-02686-5 |
| | Sharma U, Banerjee P, Joshi J, Kapoor P, Raheja M and Vijh RK (2021). Identification of markers for functional traits in Murrah buffaloes. Indian Journal of Animal Sciences, 91 (6): 468–475. | https://epubs.icar.org.in/index.php/IJAnS/article/view/115448 |
| | Sheoran N , Ganesan P, Yadav IS, Kumar A (2021). Genome-assisted molecular typing and pathotyping of rice blast pathogen, Magnaporthe oryzae, reveals a genetically homogenous population with high virulence diversity. Fungal Biology (Elsevier), 125 (9): 733-747 | https://doi.org/10.1016/j.funbio.2021.04.007 |
| | Srivastava AK, Srivastava R, Bharati AP, Singh AK, Sharma A, Das S, Tiwari PK, Srivastava AK, Chakdar H, Kashyap PL, Saxena AK (2021). Analysis of biosynthetic gene clusters, secretory and anti-microbial peptides reveals environmental suitability of Exiguobacterium profundum PHM11. Frontier in Microbiology, 12:785458. | https://doi.org/10.3389/fmicb.2021.785458 |
| | Sakthivel K, Balamurugan A, Ashajyothi SY, Baskaran V, Abirami K, Gautam RK, Kumar A (2021). Transboundary introduction of potato-infecting pathotyping in the Andaman Islands revealed by multilocus sequence typing: A potential threat to island agriculture. Journal of Bioscience (Springer), 46: 80. | 10.1007/s12038-021-00195-x |
| 2020 | ||
| | Ahlawat S, Arora R, Sharma R, Sharma U, Kaur M, Kumar A, Singh K V, Singh MK, Vijh RK (2020). Skin transcriptome profiling of Changthangi goats highlights the relevance of genes involved in Pashmina production. Scientific Reports, 10: 6050. | https://doi.org/10.1038/s41598-020-63023-6 |
| | Ahlawat S, Vijh R K, Sharma A, Sharma U, Girdhar Y, Kaur M, Chhabra P, Kumar A, Arora R. (2020). Milk somatic cell derived transcriptome analysis identifies regulatory genes and pathways during lactation in Indian Sahiwal cattle (Bos indicus). Molecular Biology Reports, 47: 7029-7038. | https://doi.org/10.1007/s11033-020-05764-1 |
| | Bangar P, Tyagi N, Tiwari B, Kumar S, Barman P , Kumari R , Gaikwad A , Bhat K V, Chaudhury A. (2020). Identification and characterization of SNPs in released, landrace and wild accessions of mungbean (Vigna radiata (L.) Wilczek) using whole genome re-sequencing. Journal of crop Science and Biotechnology, 24: 153-165. | https://doi.org/10.1007/s12892-020-00067-0 |
| | Gaikwad K, Krishna G R, Srivastava H, Saxena S, Kaila T, Tyagi A, Sharma P, Sharma S, Sharma R, Mahla H R, Mithra A S V, Solanke A, Kalia P, Rao A R, Rai A, Sharma T R, Singh N K.(2020). Chromosome scale reference genome of Cluster bean (Cyamopsis tetragonoloba (L.) Taub.). bioRxiv. | https://doi.org/10.1101/2020.05.16.098434 |
| | Gurjar M S, Aggarwal R, Jain P, Aggarwal S, Gupta S, Saharan M S (2020). Comparative genome analysis of Tilletia indica inciting Karnal bunt of wheat reveals high genomic variation. Indian Phytopathology, 73: 707-712. | http://doi.org/10.1007/s42360-020-00260-9 |
| | Kariyanna B, Prabhuraj A, Asokan R, Agrawal A, Gandhi Gracy R, Jyoti P , Venkatesan T, Bheemanna M, Kalmath B, Diwan J R, Jyoti P, Pampanna Y, Mohan M (2020). Genome mining and expression analysis of carboxylesterase and glutathione S-transferase genes involved in insecticide resistance in eggplant shoot and fruit borer, Leucinodes orbonalis (Lepidoptera: Crambidae). Frontiers in Physiology, 11: 1479. | https://doi.org/10.3389/fphys.2020.594845 |
| | Kariyanna B, Prabhuraj A, Mohan M, Bheemanna M, Kalmath B, Pampanna Y, Diwan J R (2020). Insecticide usage pattern and evolution of resistance in eggplant shoot and fruit borer Leucinodes orbonalis Guenée (Lepidoptera: Crambidae). Plant Archives, 20: 1255-1261. | http://www.plantarchives.org |
| | Kariyanna B., Prabhuraj A, Asokan R, Ramkumar G, Venkatesan T, Gracy R G, Mohan M. (2020). Genome mining and functional analysis of cytochrome P450 genes involved in insecticide resistance in Leucinodes orbonalis (Lepidoptera: Crambidae). Biotechnology and Applied Biochemistry,1-12. | https://doi.org/10.1002/bab.1997 |
| | Katneni V K, Mudagandur S S, Jangam A K, Prabhudas S K, Krishnan K, Kaikkolante N, Paran B C, Baghel D S, Koyadan V K, Jena J K, Mohapatra T.(2020). Novel Isoform Sequencing based full-length transcriptome resource for Indian White Shrimp, Penaeus indicus. Frontiers in Marine Science, section Marine Molecular Biology and Ecology, 7: 1053. | https://doi.org/10.3389/fmars.2020.605098 |
| | Sharma P, Sharma S, Ramakrishna G, Srivastava H, Gaikwad K. (2020). A comprehensive review on leguminous galactomannans: structural analysis, functional properties, biosynthesis process and industrial applications. Critical Reviews in Food Science and Nutrition, 1-23. | https://doi.org/10.1080/10408398.2020.1819196 |
| | Shekhar M S, Katneni V K , Jangam A K, Krishnan K, Kaikkolante N, Vijayan K K. (2020). The Genomics of the Farmed Shrimp: Current Status and Application. Reviews in Fisheries Science & Aquaculture, 1-21. | https://doi.org/10.1080/23308249.2020.1858271 |
| | Singh J, Aggarwal R, Gurjar M.S, Sharma S, Jain S, Saharan M S(2020). Identification and expression analysis of pathogenicity-related genes in Tilletia indica inciting Karnal bunt of wheat. Australasian Plant Pathology, 49: 393–402. | https://doi.org/10.1007/s13313-020-00711-x |
| | Srivastava A K, Srivastava R, Sharma A, Bharati A P, Tiwari P K, Singh A K, Srivastava A K, Chakdar H, Kashyap P L, Saxena A K(2020). Pan‐genome analysis of Exiguobacterium reveals species delineation and genomic similarity with Exiguobacterium profundum PHM 11. Environmental Microbiology Reports, 12(6): 639–650. | https://doi.org/10.1111/1758-2229.12890 |
| | Sahu, S, Sahu T K, Ghosal S, Gaikwad K and Rao A R (2020).Computational analysis of SNPs and INDELs in cluster bean cultivars involved in multiple trait expression. Indian Journal of Genetics and Plant Breeding, 80(2): 179-185. | https://www.indianjournals.com/ijor.aspx |
| 2019 | ||
| | Aggarwal R, Sharma S, Singh K, Gurjar M S, Sharan M S, Gupta S, Bashyal B M, Giakwad K (2019). First report of genome of wheat spot blotch pathogen, Bipolaris sorokiniana BS_112 from India using Hybrid assembly. Microbial resource Announcement, 8(38): e00308-19. | http://doi.org/10.1128/MRA.00308-19 |
| | Arora R, Sharma A, Sharma U, Girdhar Y, Kaur M, Kapoor P, Ahlawat S, Vijh RK (2019). Buffalo milk transcriptome: A comparative analysis of early, mid and late lactation. Scientific Reports, 9(1): 5993. | https://doi.org/10.1038/s41598-019-42513-2 |
| | Gracy G R, Basavaarya B R, Kariyanna B, Arunkumar CG, Jalali S K, Venkatesan T, Ballal CR, Mohan M (2019). The relationship between genome size, morphological parameters, development period and diet breadth in insect species. Biocatalysis and Agricultural Biotechnology, 20: 101188. | https://doi.org/10.1016/j.bcab.2019.101188 |
| | Ganesan P, Kumar A, Sheoran N, Aggarwal R, Satyavathi C T, Chikkara S K, Ghosh A, Jain R K (2019). First Draft Genome of Pearl millet blast pathogen, Magnaporthe grisea PMg_Dl isolate Obtained Using PacBio Single-Molecule Real - Time and Illumina NextSeq500 Sequencing. Microbial Resource Announcement, 8(20): e01499-18. | https://mra.asm.org/content/8/20/e01499-18 |
| | Gurjar M S, Aggarwal R, Jogawat A, Kulshreshtha D, Sharma S, Solanke A U, Dubey H, Jain R K (2019). De novo genome sequencing and secretome analysis of Tilletia indica inciting Karnal bunt of wheat Provides Pathogenesis-related genes. 3Biotech, 9(6): 219. | http://doi.org/10.1007/s13205-019-1743-3 |
| | Kariyanna B, Prabhuraj A, Asokan R, Babu P, Jalali S K, Venkatesan T, Gandhi GR, Mohan M (2019). Identification of suitable reference genes for normalization of RT-qPCR data in eggplant fruit and shoot borer (Leucinodes orbonalis Guenée). Biologia, 75: 289-297. | https://doi.org/10.2478/s11756-019-00346-4 |
| | Kumari R, Wankhede D P, Bajpai A, Maurya A, Prasad K, Gautam D, Rangan P, Latha M, John J, Suma A, Bhat K V, Gaikwad A B (2019).Genome wide identification and characterization of microsatellite markers in black pepper (Piper nigrum): A valuable resource for boosting genomics application. PLoSOne ,14(12): e0226002. | https://doi.org/10.1371/journal.pone.0226002 |
| | Mohindra V, Dangi T, Chowdhury L M, Jena JK (2019).Tissue specific alpha-2-Macroglobulin (A2M) splice isoform diversity in Hilsa shad, Tenualosa ilisha (Hamilton, 1822). PLoSOne, 14(7): e0216144. | https://doi.org/10.1371/journal.pone.0216144 |
| | Mohindra V, Dangi T, Tripathi R K, Kumar R, Singh R K, Jena JK, Mohapatra T (2019). Draft genome assembly of Tenualosa ilisha, Hilsa shad, provides resource for osmoregulation studies. Scientific Reports ,9: 16511. | https://doi.org/10.1038/s41598-019-52603-w |
| | Sharma U, Banerjee P, Joshi J, Kapoor P, Vijh R K (2019). Identification of QTLs for low somatic cell count in Murrah buffaloes. Indian Journal of Animal Sciences, 89(7): 758–767. | https://doi.org/10.13140/RG.2.2.24802.89283 |
| | Singh J, Aggarwal R, Gurjar M S, Sharma S, Saharan M S (2019).Identification of putative carbohydrate-active enzyme from whole genome sequence in Tilletia indica and sporulation analysis. Indian Journal of Agricultural Sciences, 89(6): 1023-26. | http://epubs.icar.org.in/ejournal/index.php |
| | Srikant A, Sharma A, Saxena P, Pandean K, Kumar M, Singh A, Chakdar H, Kashyap P L, Srivastava A K, Saxena A K (2019). Molecular detection and in silico analysis of Cold Shock Protein A (CspA) from cold adaptive Pseudomonas koreensis. Journal of Plant Biochemistry and Biotechnology, 28: 405–413. | https://doi.org/10.1007/s13562-019-00500-8 |
| | Srivastava A K, Saxena P, Sharma A, Srivastava R, Jamali H, Bharati A P, Yadav J, Srivastava A K, Kumar M, Chakdar H, Kashyap P L, Saxena A K (2019). Draft genome sequence of a cold adapted phosphorous solubilizing Pseudomonas koreensis P2 isolated from Sela Lake, India. 3Biotech, 9: 256. | https://doi.org/10.1007/s13205-019-1784-7 |
| | Srivastava A K, Sharma A, Srivastava R, Tiwari P K, Singh A K, Yadav J, Jamali H, Bharati A P, Srivastava A K, Kashyap P L, Chakdar H. (2019). Draft Genome Sequence of Halotolerant Bacterium Chromohalobacter salexigens ANJ207, Isolated from Salt Crystal Deposits in Pipelines. Microbial Resource Announcement, 8(15): pp.e00049-19. | https://doi.org/10.1128/MRA.00049-19 |
| | Tribhuvan K U, Mithra S V A, Sharma P, Das A, Kumar K, Tyagi A, Gaikwad K. (2019). Identification of genomic SSRs in cluster bean (Cyamopsis tetragonoloba) and demonstration of their utility in genetic diversity analysis. Industrial Crops and Product ,133: 221–231. | https://doi.org/10.1016/j.indcrop.2019.03.028 |
| | Tyagi A, Sandhya, Sharma P, Saxena S, Sharma R, Mithra S V A, Solanke U A, Singh N K, Sharma T R, Gaikwad K. (2019). The Genome size of clusterbean (Cyamposis tetragonaloba) is significantly smaller compared to its wild relatives as estimated by flow cytometry. Gene, 707: 205-211. | https://www.ncbi.nlm.nih.gov/pubmed/30898697 |
| 2018 | ||
| | Balamurugan A, Kumar A, Muthamilan M, Sakthivel K, Vibhuti M, Ashajyothi M, Sheoran N, Kamalakannan A, Shanthi A, Arumugam T (2018). Outbreak of tomato wilt caused by Ralstonia solanacearum in Tamil Nadu, India and elucidation of its genetic relationship using multilocus sequence typing (MLST). European Journal of Plant Pathology, 151(3): 831-839. | https://doi.org/10.1007/s10658-017-1414-3 |
| | Gurjar M S, Bhardwaj NR, Jain S, Sharma S, Gupta S, Aggarwal R (2018). Identification of resistance sources and expression level of defense-related genes in wheat against Bipolaris sorokiniana. Indian Phytopathology, 71(1):127-134. | https://link.springer.com/article/10.1007 |
| | Gurjar M S, Jogawat A, Saharan M S, Aggarwal R (2018). Response of putative pathogenicity-related genes in Tilletia indica inciting Karnal Bunt of wheat. Cereal Research Communication, 46: 89-103. | https://link.springer.com/article |
| | Gurjar M S, Jogawat A, Sharma S, Aggarwal R (2018). Functional expression of MAP kinase TiHOG1 gene in Tilletia indica inciting Karnal bunt of wheat. Indian Phytopathology, 71: 325–335. | https://link.springer.com/article/10.1007 |
| | Kumar K V, Shekhar M S, Otta S K, Karthic K, Kumar A J, Gopikrishna G, Vijayan K K (2018). First report of a complete genome sequence of White spot syndrome virus from India. Genome Announcement, 6(8): e00055-18. | https://mra.asm.org/content/6/8/e00055-18 |
| | Sahu S, Rao A R, Pandey J, Gaikwad K, Ghoshal S, Mohapatra T (2018). Genome-wide identification and characterization of lncRNAs and miRNAs in cluster bean Cyamopsistetragonoloba). Gene, 667: 112-121, | https://doi.org/10.1016/j.gene.2018.05.027 |
| | Sharma A, Girdhar Y, Kaur M, Ahlawat S, Vijh R K, Arora R (2018). Evaluation of milk fat as an alternative source of RNA from buffalo milk. Buffalo Bulletin, 37(2): 151-156. | http://kuojs.lib.ku.ac.th/index.php |
| | Sharma U, Banerjee P, Joshi J, Kapoor P, Vijh R K (2018). Identification of Quantitative Trait Loci for Milk Protein percentage in Murrah buffaloes. Indian Journal of Animal Sciences, 89(5): 528-38. | http://epubs.icar.org.in/ejournal/index.php |
| | Sharma U, Banerjee P, Joshi J, Kapoor P, Vijh R K (2018). Identification of Quantitative Trait Loci for Milk Yield in Murrah Buffaloes. Indian Journal of Animal Sciences, 88(5): 550-557. | http://epubs.icar.org.in/ejournal/index.php |
| | Sharma U, Banerjee P, Joshi J, Kapoor P, Vijh R K (2018). Identification of quantitative trait loci for fat percentage in buffaloes. Indian Journal of Animal Sciences, 88(6): 714-723. | http://epubs.icar.org.in/ejournal/index.php |
| | Singh J, Aggarwal R, Malkhan S G, Sharma S, Saharan M S (2018). Characterization of Isolates of Tilletia indica Inciting Karnal Bunt of Wheat (Triticum aestivum L.). International Journal of Current Microbiology and Applied Science, 7(12): 2080-2087. | https://www.ijcmas.com/abstractview.php |
| | Srivastava A K, Kashyap P L, Chakdar H, Kumar M, Srivastava A K, Yadav J, Jamali H, Srivastava R, Sharma A, Tiwari P, Singh A (2018). First De Novo Draft Genome Sequence of the Pathogenic Fungus Fusarium udum F02845, Associated with Pigeonpea (Cajanus cajan L. Millspaugh) Wilt. Microbial Resource Announcement, 7(13): pp.e01001-18. | https://mra.asm.org/content/7/13/e01001-18 |
| | Swathi A, Shekhar M S, Katneni V K, Vijayan K K (2018). Genome size estimation of brackishwater fishes and penaeid shrimps by flow cytometry. Molecular Biology Reports, 45: 951-960. | https://link.springer.com/article/10.1007 |
| | Tyagi A, Nigam D, Mithra S V A, Solanke A U, Singh N K, Sharma T R, Gaikwad K (2018). Genome-wide discovery of tissue-specific miRNAs in clusterbean (Cyamopsis tetragonoloba) indicates their association with galactomannan biosynthesis. Plant Biotechnolology Journal, 16(6): 1241-1257. | https://doi.org/10.1111/pbi.12866 |
| | Vijh R K, Sharma U, Banerjee P, Joshi J, Settypalli B K T, Gokhale S B, Gaur U, Yadav DK, Ahlawat S, Arora R. (2018). New Insights into the Spatial Genetic Structure of the Indian Riverine Buffalo Populations. Livestock Science, 216: 227–232. | https://doi.org/10.1016/j.livsci.2018.09.003 |
| 2017 | ||
| | Gurjar M S, Aggarwal R, Jogawat A, Sharma S, Kulshreshtha D, Gupta A, Gogoi R, Thirumalaisamy P P, Saini A (2017). Development of real time PCR assay for the detection and quantification of teliospores of Tilletia indica causing Wheat Karnal bunt in soil. Indian Journal of Experimental Biology, 55(6): 549-554. | http://nopr.niscair.res.in/bitstream/ |
| | Kaila T, Chaduvla P K, Rawal H C, Saxena S, Tyagi A, Mithra S V A, Solanke A U, Kalia P, Sharma T R, Singh N K, Gaikwad K (2017). Chloroplast Genome Sequence of Clusterbean (Cyamopsis tetragonoloba L.): Genome Structure and Comparative Analysis. Genes (Basel), 8(9): 212. | https://doi.org/10.3390/genes8090212 |
| | Kumar A, Munjal V, Sheoran N, Prameela TP, Suseelabhai R, Aggarwal R, Jain R K, Eapen S J (2017). Draft genome sequence of highly virulent race 4/biovar 3 of Ralstonia solanacearum CaRs_Mep causing bacterial wilt in Zingiberaceae plants in India. Genome Announcement, 5: e01420-16. | https://mra.asm.org/content/5/1/e01420-16 |
| | Kumar A, Sheoran N, Prakash G, Ghosh A, Chikara S K, Rajashekara H, Singh U D, Aggarwal R, Jain R K (2017). Genome sequence of unique Magnaporthe oryzae RMg_Dl isolate from India that causes blast disease in diverse cereal crops, obtained using PacBio Single Molecule, and Illumina HiSeq2500 sequencing. Genome Announcement, 5: e01570-16. | https://mra.asm.org/content/5/7/e01570-16 |
| | Rawal H C, Kumar S, Mithra S V A, Solanke A U, Nigam D, Saxena S, Tyagi A, V S, Yadav N R, Kalia P, Singh N P, Singh N K, Sharma T R, Gaikwad K (2017). High Quality Unigenes and Microsatellite Markers from Tissue Specific Transcriptome and Development of a Database in Clusterbean (Cyamopsis tetragonoloba, L. Taub). Genes, 8(11): 313. | https://doi.org/10.3390/genes8110313 |
| 2016 | ||
| | Malkhan S G, Jogawat A, Kulshreshtha D, Sharma S, Gogoi R, Aggarwal R (2016). Intraspecific variation in Tilletia indica isolates a pathogen causing Karnal bunt of Wheat. Indian Phytopathology, 69(4): 352-356. | http://epubs.icar.org.in/ejournal |
